Publications
2026
Phylogenomics of Bryopsidales and the significance of genome duplication in multinucleate cells.
Bafort, Q. (2026).
New Phytologist, 250: 1358-1360. https://doi.org/10.1111/nph.71054
The role of SIAMESE in G2 checkpoint regulation in Arabidopsis thaliana.
Schwall, M.A., Clark, F., Dale, R., Kato, N., Roeder, A.H.K., and Larkin, J.C. (2026).
New Phytologist, 250, 261–271. https://doi.org/10.1111/nph.70947
Modeling of gene regulatory networks: An annotated glossary.
Singh Yadav, A., Russell, N.J., Hernández, A.I., Petlewski, A.R., Johnson, A.R., Grinage, A.D., Banuna, B., Guan, C.J., Mahood, E.H., Younkin, G.C., Thomas, H.R., Phillips, H.R., Harline, K., Flasco, M., Miller, M.B., Scinto-Madonich, N.J., Szeluga, N.M., Mendoza, P.N., Formosa-Jordan, P., and Roeder, A. H.K. (2026).
Trends in Plant Science, in press. https://doi.org/10.1016/j.tplants.2026.02.003
Growth under pressure: The pros and cons of polyploidy induced by stress.
Oliver, L.S., Belato, P.B., Silva, J., Selmecki, A., Fox, D.T., and Roeder, A.H.K. (2026).
PNAS.
Capturing protein-protein interactions in plants: recent advances, challenges, and opportunities.
Dickey, B., Singh, Y., Maharjan, S., Qiu, Y., Chen, S. (2026).
Frontiers in Biomolecular Science, 13:1777595. https://doi.org/10.3389/fmolb.2026.1777595
Polyploidy and plant resilience to environmental stresses: insights and implications.
Sobhanian, H., Song, W-Y., Soltis, P.S., Soltis, D.E., Chen, S. (2026).
Plant Communications, 7, 101748. https://doi.org/10.1016/j.xplc.2026.101748
Next-Generation Sustainable Food Production Through Integrative Biotechnology, AI, and Climate-Resilient Innovations.
Katam, S., Maqsood, H., Bucci, B., Chen, S. (2026).
Food and Energy Security, 15, e70252. https://doi.org/10.1002/fes3.70252
A haplotype-resolved, chromosome-scale genome assembly and annotation for Carya glabra (pignut hickory; Juglandaceae).
Shan S, Ortiz EM, Klein B, Oganisyan A, Serrano G, Stults B, Torkzadeh R, Tucker A, Linnan E, Pringle B, Radtke T, Rainy MH, Swanson L, Vines G, Whitt L, Zhang H, Harkess A, Soltis PS and Soltis DE. (2026).
G3: Genes, Genomes, Genetics: in press.
Development of a homeolog-specific gene editing system in an evolutionary model for the study of polyploidy in nature.
Shan S, Pisias MT, Mavrodiev EV, Spoelhof JP, Hauser BA, Barbazuk WB, Soltis PS, Soltis DE and Yang B. (2025).
Frontiers in Genome Editing, 7: 1645542.
Pangenomes provide new insights into polyploidy in plants.
Shan S, Spoelhof JP, Blischak PD, Batley J, Soltis PS, Soltis DE and Edwards D. (2025).
Evolutionary Journal of the Linnean Society 4: kzaf010.
Development of a homeolog-specific gene editing system in an evolutionary model for the study of polyploidy in nature.
Shan S, Pisias MT, Mavrodiev EV, Spoelhof JP, Hauser BA, Barbazuk WB, Soltis PS, Soltis DE and Yang B. (2025).
Frontiers in Genome Editing, 7: 1645542.
Development of a homeolog-specific gene editing system in an evolutionary model for the study of polyploidy in nature.
Shan S, Pisias MT, Mavrodiev EV, Spoelhof JP, Hauser BA, Barbazuk WB, Soltis PS, Soltis DE and Yang B. (2025).
Frontiers in Genome Editing, 7: 1645542.
2025
Spatial ploidy inference using quantitative imaging.
Russell, N.J., Belato, P.B., Oliver, L.S., Chakraborty, A., Roeder, A.H.K., Fox, D.T., and Formosa-Jordan, P. (2025).
Cell Reports Methods, 5, 101249. https://doi.org/10.1016/j.crmeth.2025.101249
A common pathway controls cell size in the sepal and leaf epidermis leading to a nonrandom pattern of giant cells
Clark, F.K., Weissbart, G., Wang, X., Harline, K., Li, C.-B., Formosa-Jordan, P., and Roeder, A.H.K. (2025).
PLOS Biology, 23, e3003469. https://doi.org/10.1371/journal.pbio.3003469
In defense of funding foundational plant science.
Friesner, J.D., Argueso, C.T., Busch, W., Hamann, T., Strader, L., Williams, M., Wu, S., and Roeder, A.H.K. (2025).
Plant Cell, 37, koaf106. https://doi.org/10.1093/plcell/koaf106
A timeline of discovery and innovation in Arabidopsis.
Freed, C., Ashraf, A., Eckardt, N.A., Roeder, A.H.K., and Friesner, J.D. (2025).
Plant Cell, 37, koaf108. https://doi.org/10.1093/plcell/koaf108
Translational insights into abiotic interactions: From Arabidopsis to crop plants.
Roeder, A.H.K., Shi, Y., Yang, S., Abbas, M., Sasidharan, R., Yanovsky, M.J., Casal, J.J., Ruffel, S., Wirén, N. von, Assmann, S.M., et al. (2025).
Plant Cell, 37, koaf140. https://doi.org/10.1093/plcell/koaf140
From genes to patterns: five key dynamical systems concepts to decode developmental regulatory mechanisms.
Kadiyala, U., Sprinzak, D., Monk, N.A.M., Taylor, S. E., Verd, B., Sonnen K.F., Moon L., Roeder, A.H.K., Perez-Carrasco, R., and Formosa-Jordan, P. (2025).
Development, 152, dev204617. https://doi.org/10.1242/dev.204617
The polyploid continuum and the landscape of polyploid genomic variation
Twyford, A.D., Conover, J.L., Doyle, J.J., Mason, A.S., Soltis, D.E., Soltis, P.S., Wendel, J.F. (2025).
American Journal of Botany, 112: e70121. doi: 10.1002/ajb2.70121
2024
Integrating the Study of Polyploidy Across Organisms, Tissues, and Disease.
Morris, J. P., T. Baslan, D. E. Soltis, P. S. Soltis, and D. T. Fox. 2024.Volume publication date November 2024, First published as a Review in Advance on September 03, 2024.
Annual Review of Genetics, 58(1), 297–318. https://doi.org/10.1146/annurev-genet-111523-102124
“My own view is there are thousands of cryptic polyploid species that we have never recognized or scientifically named.”
– Doug Soltis
